Python for (f)MRI analysis

Python for (f)MRI analysisΒΆ

In this section (corresponding to week 1 of the course), you will learn how to use Python for (f)MRI analysis. We assume that you are familiar with basic Python syntax and constructs and the Python packages *Matplotlib, Pandas, and Numpy. If not, on the next page we explain how to brush up your Python skills using a set of tutorials we developed for another course at the University of Amsterdam.

The Working with MRI data in Python tutorial in this section discusses the most used format to store MRI data, nifti, and discusses how to work with nifti files using the Python package nibabel.

Note

The Working with MRI data in Python tutorial can be done online using Binder by clicking on the rocket icon in the top right of the tutorial page.